Theory of Everything  

  
Go Back   Theory of Everything > Member Articles > TOE Theory Articles
Reload this Page Natural selection and the probability of the universe
Register Website Toe Club Your Blog Arcade

Comment
 
LinkBack Article Tools Display Modes
<!-- google_ad_section_start -->Natural selection and the probability of the universe<!-- google_ad_section_end -->
Natural selection and the probability of the universe
The evolution of organisms on earth moves the universe into a more improbable state
Published by TinyTree
11-02-2005
<!-- google_ad_section_start -->Natural selection and the probability of the universe<!-- google_ad_section_end -->

The fundamental concept to the probability of the universe is that the probability of the state vector of the universe is independent of statistical mechanics and further it goes up and down through time. The probability of the universe is different than entropy, and has no association with it except that it is an alternative measure of the probability of the state of things around us. Entropy refers to the amount of usable energy in the environment, while the probability of the state vector refers to the actual physical probability of this environment existing. This theory was first thought of in February of 1991, and incomplete forms of it have surfaced through the years, the closest syntactically was the publication of the book “Climbing mount improbable” by Richard Dawkins in 1996. Dawkins does not draw the connection between organism improbability and the probability of the universe itself, but in the most recent issue of Natural History, November 2005 he draws forth his arguments for the probability of organisms having their existing DNA.

Dawkins cites his own source for the origination of the idea that organisms are moving further out on the probability tree in the article: “Paraphrasing the twentieth-century population geneticist Ronald A Fisher, natural selection is a mechanism for generating improbability on an enormous scale.” [1]

Ronald A Fisher is considered by many to be the father of modern statistics, introducing the methodology of analysis of variance within the framework of genetic studies. Fisher was intent on understanding the theory of evolution from a statistical frame of analysis. He went on to study a slew of experimental results from crop studies and came up with a number of the fundamental tools now used by statisticians to perform statistical analysis.

His premises were that random mutations happened to the genome of organisms, and that sexual reproduction mixed these mutations from the parent hosts. From this he built an edifice of statistical analysis on which decisions on crops and animal husbandry could be decided. He studied the minimum population sizes required to maintain genetic fitness to keep genetic variability required for long term population survival. He was the world’s first and preeminent expert on genetic studies and statistics. His conclusion was that natural selection created improbability, improbability of the genome of the organism.

Now we can ask the necessary question: Was he referring to the improbability of the living organism as a collection of usable energy, fighting against the second law of thermodynamics through its metabolism?

No- he was not. The living organism does participate in the gathering of usable energy through its life cycle, but he was not claiming that living organisms became more and more improbable through time because of their metabolic pathways. This would imply that organisms were becoming hotter and hotter, like inverse refrigerator units, which is absurd. The collecting of usable energy with regards to entropy is a vital field of study, but is independent of the study of the improbability of the organism itself existing.

So we must ask- what is the probability of an organism existing? How can we ascertain this probability, or make an estimate as to its value? What does it mean?

Dawkins expresses it succinctly in his Natural History essay: “nonrandom survival of randomly varying hereditary instructions for building embryos. Yet, given the opportunities afforded by deep time, this simple little algorithm generates prodigies of complexity, elegance, and diversity of apparent design.” [1]

Random variations in the instructions for building an organism make it more improbable. Thus, the deterministic and algorithmic changes to an organisms DNA, such as the copying repetition in Huntington’s disease, do not contribute to the improbability of the organism. Systematic and programmed DNA changes, which are known to occur as DNA is copied, are not probabilistic events. Such changes would be equivalent to any other deterministic unfolding of a manifold or mathematical process.

The random changes which occur to an organisms DNA do contribute to the improbability of its existing in a certain state. Copy errors which are due to nondeterministic involvement of foreign pathogens, single point mutations in the DNA strand, and the random crossover points of sexual recombination all contribute to improbability of the DNA, and hence to the organism as a whole constructed from this DNA sequence. This can be stated precisely by assigning probabilities to each type of event, and then analyzing the probability that a specific DNA strand could come into existence.

Note that many DNA sequences have multiple approaches to reaching a specific sequence. For example, a series could be copied, and then part of it accidentally deleted which would yield the same DNA sequence as a few random insertions.

In the human being, there are approximately 3 billion nucleotide pairs, which have been sequenced in the human genome project [2]. There are also roughly 6 billion humans living on the planet at this point in time. Most of the humans share vast tracts of the 3 billion nucleotide pairs, so they can not be considered independent from each other. Nor within a single individual can the billions of nucleotide pairs be considered independent, much of the DNA code consists of unused copies of other parts of the genetic code or as redundant data. So let us assume that for a human there are 1 billion unique nucleotide pairs, and there are four unique “letters” to the code. Thus, a rough estimation would be 1 in 4 raised to the power of 1 billion for the human genetic code to exist as it is now.

If we add to this the myriad other organisms which inhabit our planet, we can see we live in a very improbable place indeed. Further, it can be seen that each random mutation to the genetic code which is preserved has a chance of making the genetic code even more improbable. Some of the changes will make it more probable, such as a massive deletion of a section of code, and some will make it less probable, such as single point mutations which are preserved.

The probability of the DNA of organisms changes through time, becoming less and less probable as more and more mutations are preserved in the genetic code. So we can ask: why are more and more mutations being preserved in the genetic code? Why doesn’t the random walk of changes every once in a while crop a huge amount of information from the genetic code, thus resetting the organisms improbability?

The answer is natural selection. Many of the specific random mutations are actually favorable to the organisms survival. The creation of the random mutations is entirely nondeterministic, but the filtering mechanism of survival is largely deterministic. Variability in survival preserve those changes which improve the fitness of the organism. The effect of this is that organisms, through the process of deep time, move further and further out on the probability of their possibly existing at all.

The universe as a whole moves into a more improbable state through the process of random mutation and natural selection. Natural selection functions as a ratchet, increasing the improbability of the living forms on the planet.

Dawkins expresses this as: “The battle that we biologists face, in our struggle to convince the public and their elected representatives that evolution is a fact, amounts to the battle to convey to them the power of Darwin’s ratchet- the blind watchmaker- to propel lineages up the gentle slopes of Mount Improbable.” [1]

This movement towards higher improbability has nothing to do with the distribution of energy associated with statistical mechanics. It is tied to the underlying structure of the propagation of living forms on our planet, and the fact that this continuation of the living form allows for the preserving of nondeterministic events.

This is a simplification, a useful one, but a simplification of the probability of the planet existing as it does now. To examine this on a high level, let us perform a thought experiment.

First, let us imagine the tree of life, not of the organisms which have existed and do exist, but the tree of life of all possible organisms which could exist, given possible embryonic development conditions and the span of environments available on earth. The living forms that did and do live would be a small part of this larger tree of all possible organisms. This huge tree of organisms would in turn be a small subset of all possible genetic variability. The mammoth tree of all genetic variability would include every single DNA sequence which could exist, and which most would not code for an organism which could even make it past the zygote stage.

The very base of this mammoth tree, where the smaller DNA codes reside would be the most probable forms which could exist. Those living organisms which did reside on the earth in earlier years exist in this part of the genetic tree space. There will be many parts of even this early tree which code for viable organisms and which have not been explored by our planet during the evolution of living things. As time passes, some of the existing species move further down on the tree, to those organisms which are less probable, but more effective at competing for the limited resources of our planet.

At this stage there are a larger number of viable organisms which either were not explored, IE the DNA never randomly mutated to create the organism, or that were explored but do to external happenings unrelated to genetic fitness did not survive. Thus, the exigencies of living on the planet introduce another layer to the computation of the probability of the organisms existing as they do now; the random events of population distribution and species dispersal contributes to the specific trajectory on which our planet moved through the probability space of viable organisms.

However, it can be seen that there are a large number of unexplored spaces on this massive tree which are viable, alternative physical realities where organisms live and breath completely differently than our own. Further, these alternative realities are also highly improbable, just as our own is. The alternative existence of these other living species shows that being improbable does not mean impossible- it merely means alternative. That is to say, there are billions of alternative worlds which have highly improbable organisms running around in them, which does not imply any special quality to our own existence. The universe we live in is merely the one in which we happen to have landed in.

However, we live in a highly improbable universe, which in general way is moving towards greater and greater improbability.


1 Richard Dawkins -Natural History November 2005 pp 35-37

2 Marion L. Carroll and Jay Ciaffa The Human Genome Project:
A Scientific and Ethical Overview Action bioscience August 2003

3 U.S Census Bureau World Population Information


To read the initial explanation of the probability of the universe, turn here:

http://www.toequest.com/forum/showthread.php?t=1020


The other sources can be found here:

http://www.naturalhistorymag.com/mas..._feature1.html

http://www.actionbioscience.org/genomic/carroll_ciaffa.html

http://www.census.gov/ipc/www/world.html


Latest 5 articles

Article Tools

Featured Articles
Read more
THE 1984 WAR: A War of Perception

A Conquest of the United States
  #1  
By mkirkpatrick on 11-03-2005, 08:31 PM
Smile maybe a cypher wrote the code of d.n.a.

Thank you TinyTree,you worked hard presenting this,I am still considering a reply
but you have done some home work.many thanks.




kind regards michael.
Reply With Quote
  #2  
By TinyTree on 11-04-2005, 09:21 PM
Spirals

Quote:
Originally Posted by SimpleKid18
If you want to see what you can make of the number 'loop' that I found hilst fiddling with an equation. It can be seen in the Mathematics section of the articles called The Number Spiral. If you want a spreadsheet of the numbers so you can see the whole pattern or a word document containing all 1-99 numbers, then e-mail me at
I like your number spiral. I guess the resounding question would be: what would be the mechanism for creating the spiral?

Here are some pages you might enjoy:

http://online.redwoods.cc.ca.us/instruct/darnold/CalcProj/Fall98/DarrenT/EquiangularSpiral.html

In mathematics, Descartes was the first to discover the equiangular spiral formula around the middle of 17th century. Was SimpleKid18 the first to discover the spiral vortex?

The logarithmic spiral forms as the radius grows exponentially with the angle:

http://www.2dcurves.com/spiral/spirallo.html

This would make sense from a growth perspective, as the angular motion is linear (based on a constant accretive spin process of the organism) yet the radius grows exponentially as the organisms growth is exponential

If you are looking for a tie in to physics:

  • the force that makes a point move in a logarithmic spiral orbit is proportional to 1/r3 3)
  • a particle moving in a uniform magnetic field, perpendicular to that field, forms a logarithmic spiral.
If you are looking to form some biological shapes, perhaps try the Gielis curve

http://www.2dcurves.com/power/powergc.html
Reply With Quote
  #3  
By mkirkpatrick on 11-10-2005, 10:18 PM
Smile Where do the glands come in!

Your post makes some interesting reading TinyTree,with regard the dna,what effect do you think the glands have on dna,the chemical secretions from our
glands affect dna,by as it appears to unlock sequences and en-coded messages
what do you think on this,and in particular I would like your opinion on the
Pinel-gland and its poissible effects on dna.




kind regards michael.
Reply With Quote
  #4  
By TinyTree on 11-13-2005, 11:11 PM
DNA and our glands

Quote:
Originally Posted by mkirkpatrick
Your post makes some interesting reading TinyTree,with regard the dna,what effect do you think the glands have on dna,the chemical secretions from our
glands affect dna,by as it appears to unlock sequences and en-coded messages
I apologize, I did not see this response earlier.

I am not familiar with the effect of our glands on our DNA. However, I will attempt to briefly comment on the idea with regards to the probability of the universe. Eukaryotes reproduce through gametes (sperm and egg) and thus have two distinct cell lines in their bodies. There are those cells necessary for functioning (cells dividing through mitosis, such as replacing your skin cells) and the gamete cells.

For the normal organs and system cells, it seems highly likely that our glands could affect the copying of DNA sequences within them, such as adjusting the tightness of copying controls. There are many cellular collapses which occur due to DNA problems (such as cancer), and it seems that our bodies would respond to threats with appropriate actions. Obviously, our bodies can not fight cancer off completely, but it would be surprising if there were no initial attempts at internal control to such a pathological problem.

So it seems likely our bodies run a regulatory system on DNA copying which would include loosening and tightening of the controls. On one extreme would be failure to successfully duplicate cells, and on the other such looseness that cancer and other DNA problems cause organism destruction. Therefore, if this is true (which is speculative) our bodies play an odds game with the future, trying to maximize the long term odds of reaching reproductive age.

Or in other words- evolution has "learned" through trial and error that the universe is an odds game and attempts to play the odds in the favor of the organism as much as possible, which entails taking on risks.

Quote:
Originally Posted by mkirkpatrick
what do you think on this,and in particular I would like your opinion on the Pinel-gland and its poissible effects on dna.
The above adjustements to DNA copying would not affect the gamete line, and thus would only be affecting the individual organisms survival, not the survival of the entire species.

However, it is known that some species, at least some bacteria, show increased frequency in DNA mutations within certain environment conditions- that is a higher frequency of DNA mutation than one would expect from the environment. The organisms respond to stress in the environment with a greater diversity of DNA modification- leading to increased risk of individual failure but also increased chances of finding adaptations to the new environment.

I do not know of any evidence that this occurs in the human lineage, but it would not be entirely surprising.

But the outcome of this WOULD be long term changes to the state vector of the entire system as a sub portion of the system (the organism) responded to external stimulus with greater variability in the offspring.

In general, a greater variability of extant species increases the improbability of the system as a whole, and thus a highly fractured ecosystem with many interrelated parts evolving together would be more improbable than a single monolithic ecosystem with just a few species contributing to it.
Reply With Quote
Comment


Currently Active Users Viewing This Article: 1 (0 members and 1 guests)
 
Article Tools
Display Modes

Posting Rules
You may not post new articles
You may not post comments
You may not post attachments
You may not edit your posts

vB code is On
Smilies are Off
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On
Forum Jump



Powered by vBulletin® Version 3.6.8
Copyright ©2000 - 2008, Jelsoft Enterprises Ltd.
Content Relevant URLs by vBSEO 3.2.0
vBulletin Skin developed by: vBStyles.com

Article powered by GARS 2.1.8m ©2005-2006